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DESIGN OF FIBER-OPTIC BIOSENSOR WITH NEAR-INFRARED SPECTRAL ANALYSIS
Křepelka, Pavel ; Jakubec,, Martin (referee) ; Skládal, Petr (referee) ; Mikulka, Jan (advisor)
This thesis deals with a measurement and interpretation of NIR spectra of bacterial cells and design of biosensor using this analytical technique. In the first chapter, there is introduction of current state of knowledge in the field of NIR spectroscopy in microbiology and technology of fiber optic biosensors. The summary of this chapter shows that NIR is a suitable technique for direct molecular analysis of bacteria, but it suffers from low sensitivity and insufficient interpretation of bacterial spectra. In the next part of the thesis, there is a theoretical background of spectral analysis techniques and technology of fiber optic sensors. In the practical part of this work, there is suggested the elimination of disadvantages of NIR spectroscopy in microbiology by a series of experiments used for interpretation of NIR spectra of bacteria and design of fiber optic sensor to increase sensitivity of this technique. In this work, spectral regions important for the identification of bacterial strains were determined and partially interpreted and the sensor for bacterial analysis capable of classifying strains based on 105 captured cells was designed. Therefore, the objectives of this work were fulfilled.
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Properties of novel magnetoelectric and multiferroic ceramic materials
Osička, Luděk ; Kachlík, Martin (referee) ; Maca, Karel (advisor)
Literature search about properties of magnetoelectric and multiferroic ceramic materials was made. Ferromagnetism and ferroelectricity and requirements for materials in which both of these properties can exist in the same phase were discussed. Further, multiferroics were classified by mechanism of ferroelectricity and by their crystal structure. Finally, multiferroic and magnetoelectric composites and some examples of strong magnetoelectric effect in multiferroics were described. In experimental part of this bachelor thesis preparation of specimens of magnetoelectric perovskite EuTiO3 was described. Prepared specimens had higher density than specimens described in literature and were phase-pure and they are suitable for research of magnetoelectric properties of EuTiO3 by infrared spectroscopy.
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Crystallization of microbial polyesters - methods and biological consequences
Liczka, Jan ; Kalina, Michal (referee) ; Sedláček, Petr (advisor)
The aim of this bachelor thesis was to test suitable methods for preparation of amorphous form of microbial polyesters and to perform model experiment to study a kinetics of crystallization of prepared polyesters. The theoretical part deals with PHA characteristics and various methods of isolating PHB granules from bacterial cells. In the experimental part, measuring techniques such as analytical centrifugation, dynamic light scattering (DLS) and Fourier transform infrared spectroscopy (FTIR) were tested to characterize the properties of PHB granules. Furthermore, an experiment was performed to isolate native PHB granules from Cupriavidus necator using lysozyme, deoxyribonuclease and cell disruption by ultrasonification. The results of the analyzes showed that the granules were either isolated amorphous only in the wet and crystallized upon drying, or that the granules were completely amorphous but not isolated from the bacterial cell.
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Analytical methods for hyaluronan
Černá, Lucie ; Mravec, Filip (referee) ; Pekař, Miloslav (advisor)
This thesis deals with of simple methods for determining the concentration of hyaluronan in aqueous solution and compares the performance of each selected methods such as UV -VIS spectroscopy, IR spectroscopy and the method of determination by alcian blue. These methods were chosen for their simplicity and low cost of the assay. As the most reliable of these three methods, seems to be the method of IR spectroscopy. Determination of the concentration of HA by this method is relatively accurate at concentrations above 0.4 % in deionized water. The method of UV-VIS spectroscopy is based on a linear calibration curve determination, but no characteristic peak was detected, which means that this determination could be influenced by other components of the aqueous solution. Weak ionic strength and molecular weight of HA does not affect the determination. In the method with alcian blue, the results were quite unsatisfactory and does not correspond with the literature. Therefore, this method is not applicable in this form for determining the concentration of HA. Another option for determining the concentration of the HA is ELISA method. These are commercially produced kits suitable for determining low concentrations in low volumes. Its price is higher than the above- mentioned methods.
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Preparation of organic semiconducting thin films by vacuum evaporation
Schön, Martin ; David, Jan (referee) ; Salyk, Ota (advisor)
This thesis deals with preparation of organic molecular thin film compounds and its properties like morphology and purity. The vapour deposition was used for thin films preparation, because used materials are very few soluble. Thin films properties were characterized with the infrared spectroscopy (FTIR) and scanning electron microscope. There are described basics of infrared spectroscopy, spectra measurement and interpretation in the theoretical part. Process of thin film preparation is also described in this part. In the experimental part are described used vacuum technology and measuring instruments, process of sample measurement and there is the list of studied materials. 12 derivates of diketopyrrolopyrrols (DPP) were studied in this thesis. Diketopyrrolopyrroles (DPP) and its derivates have interesting chemical and physical properties, expecting wide range of applications, especially in electronics industry.
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Stability of Soil Organic Matter
Heldesová, Michaela ; Doskočil, Leoš (referee) ; Kalina, Michal (advisor)
This bachelor thesis summarizes available information about current research of soil organic matter stability and it divides them into two logical units. The first part includes environmental, physical and chemical factors, including human activities, which affect the stability or decomposition of soil organic matter. The methods used for the study of organic matter in the soil are summarized in the second part of this thesis. There the attention is paid to the accumulation of organic matter in specific pools, the ways of extraction of organic compounds and the use of quantitative and qualitative analytical methods to describe various characteristic of organic matter.
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Study of Optical Properties of Metallic Structures and Their Applications in Nano-Optics
Neuman, Tomáš ; Munzar,, Dominik (referee) ; Kalousek, Radek (advisor)
Interaction of metallic structures with electromagnetic radiation is a living topic of near-field optics including plasmonics and nanophotonics. The field-matter interaction treated on the subwavelength scale opens the path to a wide range of applications, among others to different variants of the surface enhanced spectroscopy. In this thesis we theoretically describe how the near-field properties of the metallic structures can be accessed by a probe of near-field scanning optical microscope. Formation of the signal in the near-field microscopy utilizing weakly interacting probes is discussed. Further, we elucidate the mechanism of the surface enhanced infrared spectroscopy. We utilize a model example of linear dipole antennas interacting with sample structures. A close connection is found between the spectroscopic signal and signal of the scattering type near-field optical microscopy.
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The use DC electrical method in diagnostics of insulating materials
Volf, Michal ; Rozsívalová, Zdenka (referee) ; Frk, Martin (advisor)
In this work describe to the Dielectric relaxation spectroscopy for the evaluation of the actual status of insulation systém. The used methods of quantifying the dielectric response in time domain are polarization-depolarization current and recovery voltage measurement and in frequency domain the loss factor and the complex capacitance measurement. Influence of thermal ageing and temperature dependences of charge and dischage currents are observed.
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Synthesis of low-crosslinked polymers by plasma polymerization
Kuchtová, Štěpánka ; Bránecký, Martin (referee) ; Čech, Vladimír (advisor)
This bachelor thesis deals with plasma enhanced chemical vapour deposition (PECVD), specifically plasma polymerisation, which has been used for the synthesis of low density crosslinked polymer thin films. Organosilicon thin films were deposited on a silicon substrate by radio frequency (RF) capacitively coupled plasma in a deposition chamber. Spectroscopic ellipsometry was used to determine the layer thickness and its optical properties. The chemical structure of the layers was investigated by Fourier transform infrared spectroscopy and the mechanical properties were investigated by nanoindentation. The effect of power and self-bias (USB) on the chemical structure, mechanical and optical properties of the as-prepared layers, which are related to the crosslinking density, was investigated in the context of achieving low crosslinking density of the material. Low crosslinked plasma polymers were synthesized at a self-bias level of 1 V, which corresponds to an approximate RF power of 0,1 W. This material can be characterized by a density of 1, 2 g·cm-3 an elastic modulus of 4 GPa, a hardness of 0,04 GPa and a refractive index of 1.53 at 633 nm (He-Ne laser wavelength). Infrared spectroscopy confirmed that this plasma polymer is composed of a carbon network with fewer embedded silicon atoms and, in particular, the highest concentration of vinyl groups compared to plasma polymers prepared at higher powers.
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